Downloads
Abstract
In this paper, we focus on developing algorithms for building phylogenetic tree from a set of DNA sequences. We use Hamming distance and dynamic programming to calculate the distance between two DNA sequences (reflecting the sequence similariry). An algorithm for calulcating the distance between two DNA sequences, pairwise aligment and multiple alignment are developed. We use our propsed hierachical clustering algorithm for building the phylogenetic tree and install the discovered phylogenetic tree as a DNA database taxonomy browser in our Bio-Informatic WebSite.
Issue: Vol 3 No 9&10 (2000)
Page No.: 1-8
Published: Oct 31, 2000
Section: Article
DOI: https://doi.org/10.32508/stdj.v3i9&10.3589
Download PDF = 421 times
Total = 421 times
Most read articles by the same author(s)
- Hoang Kiem, Do Phuc, DEVELOPING ALGORITHMS FOR FINDING THE SIMILAR MOTIF IN DNA SEQUENCES , Science and Technology Development Journal: Vol 3 No 7&8 (2000)
- Hoang Kiem, Do Phuc, A COMBINED MULTI-DIMENSIONAL DATA MODEL, SELF ORGANIZING ALGORITHM AND GENETIC ORITHM FOR CLUSTER DISCOVERY IN DATA MINING , Science and Technology Development Journal: Vol 2 No 2&3 (1999)
- Hoang Kiem, Do Phuc, USING DATA MINING IN EDUCATION AND TRAINING , Science and Technology Development Journal: Vol 2 No 4&5 (1999)